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Exploring foundation models for DNA and beyond 🧬

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cgeorgiaw 
updated a bucket about 20 hours ago
loubnabnl 
posted an update 6 days ago
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𝐈𝐧𝐭𝐫𝐨𝐝𝐮𝐜𝐢𝐧𝐠 🧬 𝐅𝐢𝐧𝐞𝐃𝐍𝐀: 𝐭𝐡𝐞 𝐛𝐞𝐬𝐭 𝐝𝐚𝐭𝐚𝐬𝐞𝐭 𝐭𝐨 𝐭𝐞𝐚𝐜𝐡 𝐚𝐧𝐲 𝐥𝐚𝐧𝐠𝐮𝐚𝐠𝐞 𝐦𝐨𝐝𝐞𝐥 𝐃𝐍𝐀.
Training Qwen3-14B on it produces Carbon-X, the strongest open model on DNA benchmarks, on par with GPT-6.1 Sol.

It contains:
- Midtraining: 300B+ tokens of genomic sequences, papers and web pages mixing DNA with text
- SFT: 200K samples, from variant effect prediction to sequence question answering
- RL: 98K prompts with verifiable rewards

Data, models and the full recipe are open.
HuggingFaceBio/FineDNA

Enjoy this late Halloween treat! 🎃
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