Protein Sequence Corpora Synthyra/human_proteome Viewer • Updated Feb 11, 2025 • 102k • 40 Synthyra/og_prot90 Viewer • Updated Jul 3, 2025 • 85M • 228 Synthyra/og_prot90_packed Updated Oct 2 • 62 Synthyra/ProteinSelfies Viewer • Updated Sep 10, 2025 • 9.92M • 2.58k
Annotation Vocabulary Synthyra/ESMC-6B-SAE-Annotation-Vocabulary-Features Viewer • Updated Aug 27 • 105k • 40 Synthyra/SwissProt-AV-SAE-Compare Viewer • Updated Aug 26 • 1.99M • 389 • 1
Protein-Protein Affinity Synthyra/AffinityBenchmarkv5.5 Viewer • Updated Mar 4, 2025 • 162 • 18 Synthyra/ppi_affinity Viewer • Updated Sep 15, 2025 • 11k • 16 Synthyra/ProteinProteinAffinity Viewer • Updated Mar 17, 2025 • 11.1k • 18
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 98 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 18
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 75 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 60 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 11 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 38
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated Oct 9 • 3.46k • 20 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated Oct 9 • 876 • 19 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated Oct 2 • 377 • 3 Synthyra/ANKH_base 0.7B • Updated Oct 9 • 340
Protein Embeddings Synthyra/canonical_embedding_sequences Viewer • Updated 4 days ago • 3.69M • 229 GleghornLab/vec2vec_embeddings Updated 11 days ago • 94 Synthyra/vector_embeddings Updated Oct 2 • 15
Structure Prediction lhallee/AtlasFold-Data Viewer • Updated Oct 8 • 36.6M • 3.87k Synthyra/PDB-Monomeric-Structure-ESMFold2 Viewer • Updated Jul 9 • 148k • 435 Synthyra/Boltz2 Feature Extraction • 0.5B • Updated Oct 9 • 262 • 1 Synthyra/ESMFold2 Feature Extraction • 0.2B • Updated Oct 9 • 1.02k
Atlas PLI Synthyra/FDA-Approved-Drugs Viewer • Updated May 7 • 3.48k • 50 Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 98 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 18
Vec2Vec GleghornLab/vec2vec_embeddings Updated 11 days ago • 94 Synthyra/vector_embeddings Updated Oct 2 • 15
Speedrunning ESM2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated Oct 2 • 6 Synthyra/esm_speedrun 31.6M • Updated Jan 3, 2025 • 21
Protein Sequence Corpora Synthyra/human_proteome Viewer • Updated Feb 11, 2025 • 102k • 40 Synthyra/og_prot90 Viewer • Updated Jul 3, 2025 • 85M • 228 Synthyra/og_prot90_packed Updated Oct 2 • 62 Synthyra/ProteinSelfies Viewer • Updated Sep 10, 2025 • 9.92M • 2.58k
Protein Embeddings Synthyra/canonical_embedding_sequences Viewer • Updated 4 days ago • 3.69M • 229 GleghornLab/vec2vec_embeddings Updated 11 days ago • 94 Synthyra/vector_embeddings Updated Oct 2 • 15
Annotation Vocabulary Synthyra/ESMC-6B-SAE-Annotation-Vocabulary-Features Viewer • Updated Aug 27 • 105k • 40 Synthyra/SwissProt-AV-SAE-Compare Viewer • Updated Aug 26 • 1.99M • 389 • 1
Structure Prediction lhallee/AtlasFold-Data Viewer • Updated Oct 8 • 36.6M • 3.87k Synthyra/PDB-Monomeric-Structure-ESMFold2 Viewer • Updated Jul 9 • 148k • 435 Synthyra/Boltz2 Feature Extraction • 0.5B • Updated Oct 9 • 262 • 1 Synthyra/ESMFold2 Feature Extraction • 0.2B • Updated Oct 9 • 1.02k
Protein-Protein Affinity Synthyra/AffinityBenchmarkv5.5 Viewer • Updated Mar 4, 2025 • 162 • 18 Synthyra/ppi_affinity Viewer • Updated Sep 15, 2025 • 11k • 16 Synthyra/ProteinProteinAffinity Viewer • Updated Mar 17, 2025 • 11.1k • 18
Atlas PLI Synthyra/FDA-Approved-Drugs Viewer • Updated May 7 • 3.48k • 50 Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 98 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 18
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 98 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 18
Vec2Vec GleghornLab/vec2vec_embeddings Updated 11 days ago • 94 Synthyra/vector_embeddings Updated Oct 2 • 15
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 75 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 60 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 11 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 38
Speedrunning ESM2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated Oct 2 • 6 Synthyra/esm_speedrun 31.6M • Updated Jan 3, 2025 • 21
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated Oct 9 • 3.46k • 20 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated Oct 9 • 876 • 19 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated Oct 2 • 377 • 3 Synthyra/ANKH_base 0.7B • Updated Oct 9 • 340